Jure Dobnikar: Organization of Soft and Biological Matter



Liquid-crystalline ordering of antimicrobial peptide-DNA complexes controls TLR9 activation
Nathan W. Schmidt, Fan Jin, Roberto Lande, Tine Curk, Wujing Xian, Calvin Lee, Loredana Frasca, Daan Frenkel, Jure Dobnikar, Michel Gilliet, and Gerard C. L. Wong
Nature Materials 14, 696-700 (2015) DOI: 10.1038/nmat4298


Nanoparticle Organization in Sandwiched Polymer Brushes
T. Curk, F. J. Martinez-Veracoechea, D. Frenkel, and J. Dobnikar,
Nano Letters 4 (5), 2617-2622 (2014) DOI: 10.1021/nl500449x

Designing Stimulus-sensitive Colloidal Walkers
F. J. Martinez-Veracoechea, B. M. Mognetti, S. Angioletti-Uberti, P. Varilly, D. Frenkel, and J. Dobnikar,
Soft Matter 10, 3463-3470 (2014) DOI: 10.1039/C3SM53096E

Pattern formation and coarse-graining in 2D colloids driven by multiaxial magnetic fields
K. MŘller, N. Osterman, D. Babic, C. N. Likos, J. Dobnikar, A. Nikoubashman,
Langmuir 18, 5088-5096 (2014) DOI: 10.1021/la500896e

Electrostatics of Soft and Disordered Matter
D. Dean, J. Dobnikar, A. Naji, R. Podgornik (Editors),
Pan Stanford Publishing Pte. Ltd., Singapore (2014) link


Chemotactic Sensing towards Ambient and Secreted Attractant Drives Collective Behaviour of E. coli
T. Curk, D. Marenduzzo, and J. Dobnikar,
PLoS One 8 (10), e74878 (2013) DOI: 10.1371/journal.pone.0074878

Collective Ordering of Colloids in Grafted Polymer Layers
T. Curk, F. J. Martinez-Veracoechea, D. Frenkel, and J. Dobnikar,
Soft Matter 9 (23), 5565-5571 (2013) DOI: 10.1039/C3SM50486G

REVIEW PAPER: Emergent colloidal dynamics in electromagnetic fields
J. Dobnikar, A. Snezhko, and A. Yethiraj,
Soft Matter 9 (14), 3693-3704 (2013) DOI: 10.1039/C3SM27363F

Slow colloidal dynamics in polymer brushes
J. Dobnikar, T. Curk, F. J. Martinez-Veracoechea, and D. Frenkel,
AIP Conf. Proc. 1518, pp. 391-397 DOI: 10.1063/1.4794602


Phase behaviour of colloidal assemblies on 2D corrugated substrates
S. El Shawish, E. Trizac, and J. Dobnikar,
J. Phys.: Condens. Matter 24 284118 (2012) DOI: 10.1088/0953-8984/24/28/284118

Layering, freezing, and re-entrant melting of hard spheres in soft confinement
T. Curk, A. de Hough, F.J. Martinez-Veracoechea, E. Eiser, D.Frenkel, J. Dobnikar, and M. Leunissen
Phys. Rev. E 85 021502 (2012) DOI: 10.1103/PhysRevE.85.021502

Predicting DNA-mediated colloidal pair interactions
B.M. Mognetti, P. Varilly, S. Angioletti-Uberti, F.J. Martinez-Veracoechea, J. Dobnikar, M. Leunissen, and D. Frenkel
Proc. Natl. Acad. Sci. U.S.A. 109 E378 (2012) DOI: 10.1073/pnas.1119991109

Coarse graining E. coli chemotaxis: from multi-flagella propulsion to logarithmic sensing
T. Curk, F. Matthaeus, Y. Brill-Karniely, and J. Dobnikar
Adv. Exp. Med. Biol. 736 381 (2012) DOI: 10.1007/978-1-4419-7210-1_22


Low Salinity Oil Recovery: Increasing Understanding of the Underlying Mechanisms of Double Layer Expansion
S. Y. Lee, K. J. Webb, I. R. Collins, A. Lager, S. M. Clarke, M. O'Sullivan, A. F. Routh, and Jure Dobnikar
Proceedings of the 16th EAGE meeting, Cambridge (2011)

On the origin and characteristics of noise-induced LÚvy Walks of E. Coli
F. Matthaeus, M.S. Mommer, T. Curk, and J. Dobnikar
PLoS ONE 6 e18623 (2011) DOI: 10.1371/journal.pone.0018623

Colloidal ionic complexes on periodic substrates: Ground-state configurations and pattern switching
S. El Shawish, J. Dobnikar, E. Trizac
Phys. Rev. E 83 041403 (2011) DOI: 10.1103/PhysRevE.83.041403


Dimeric and dipolar ground state orders in colloidal molecular crystals
E. Trizac, S. El Shawish, J. Dobnikar
An. Acad. Bras. Cienc. 82 87 (2010) DOI: 10.1590/S0001-37652010000100008


Field-induced self-assembly of suspended colloidal membranes
Osterman N, Poberaj I, Dobnikar J, Frenkel D, Ziherl P, Babic D
Phys Rev Lett 2009, 103, 228301 10.1103/PhysRevLett.103.228301

E. coli Super-diffusion and Chemotaxis - Search Strategy, Precision and Motility
F. Mattheus, M. Jagodic, and J. Dobnikar,
Biophys. J. 97 946 (2009) DOI: 10.1016/j.bpj.2009.04.065

Counterion-mediated electrostatic interactions between helical molecules
M. Kanduc, J. Dobnikar, and R. Podgornik,
Soft Matter 5 868 (2009) DOI: 10.1039/B811795K


Ground states of model core-softened colloids
J. Dobnikar, J. Fornleitner, and G. Kahl
J. Phys.: Condens. Matter 20 494220 (2008) DOI: 10.1088/0953-8984/20/49/494220

Phonon dispersion curves of twodimensional colloidal crystals: on the wavelength dependence of friction
J. Baumgartl, J. Dietrich, and C. Bechinger, J. Dobnikar, and H.H. von Gruenberg
Soft Matter 4 2199 (2008) DOI: 10.1039/b807881e

Ground states of colloidal molecular crystals on periodic substrates
S. El Shawish, J. Dobnikar, and E. Trizac
Matter 4 1491 (2008) DOI: 10.1039/b801907j


Observation of Condensed Phases of Quasiplanar Core- Softened Colloids
N. Osterman, D. Babic, I. Poberaj, J. Dobnikar, and P. Ziherl
Phys. Rev. Lett. 99 248301 (2007) DOI: 10.1103/PhysRevLett.99.248301

Macroion virial contribution to the osmotic pressure in charge-stabilized colloidal suspensions
E. Trizac, L. Belloni, J. Dobnikar, R. Castaneda-Priego and H.H. von Gruenberg
Phys. Rev. E 75 011401 (2007) DOI: 10.1103/PhysRevE.75.011401

Stability of hexagonal lattice of charged colloids
J. Dobnikar and P. Ziherl
J.Mol.Liquids 131 173 (2007) DOI: 10.1016/j.molliq.2006.08.034


Testing the relevance of effective interaction potentials between highly charged colloids in suspension
J. Dobnikar, R. Castaneda-Priego, H.H von Gruenberg and E. Trizac
New Journal of Physics 8 277 (2006) DOI: 10.1088/1367-2630/8/11/277

Strain-induced domain formation in two-dimensional colloidal systems
S. Bleil, H. H. v. Gruenberg , J. Dobnikar , R. Castaneda-Priego and C. Bechinger
Europhys. Lett. 73 450 (2006) DOI: doi:10.1209/epl/i2005-10399-0


Direct measurement of three-body interactions amongst charged colloids
Brunner M., Dobnikar J., von Gruenberg H.H. and Bechinger C.
Phys. Rev. Lett. 92 (7) 078301 (2004) DOI: 10.1103/PhysRevLett.92.078301

Three-body interactions in colloidal systems
Dobnikar J., Brunner M., von Gruenberg H.H. and Bechinger C.
Phys .Rev. E 69 (3) 031402 (2004) DOI: 10.1103/PhysRevE.69.031402

Poisson-Boltzmann Brownian dynamics of charged colloids in suspension
Dobnikar J., Halozan D., Brumen M., von Gruenberg H.H. and Rzehak R.
Computer Phys. Comm. 159 (2) 73 (2004) DOI: 10.1016/j.cpc.2003.10.001

Three- and four-body interactions in colloidal systems
Dobnikar J., M. Brunner, J. Baumgartl, C. Bechinger and H.H. von Gruenberg
Proceedings of SPIE 5514 340 (2004) DOI: 10.1117/12.554610


Many-body interactions and the melting of colloidal crystals
Dobnikar J., Chen Y., Rzehak R. and von Gruenberg H.H.
J. Chem. Phys. 119 (9) 4971 (2003) DOI: 10.1063/1.1595642

Effect of many-body interactions on solid-liquid phase behaviour of charge-stabilized colloidal suspensions
Dobnikar J., Rzehak R. and von Gruenberg H.H.
Europhys. Lett. 61 (5) 695 (2003) DOI: 10.1209/epl/i2003-00142-5

Many-body interactions in colloidal suspensions
Dobnikar J., Chen Y., Rzehak R. and von Gruenberg H.H.
J. Phys.: Condens. Matter 15 (1) S263 (2003) DOI: 10.1088/0953-8984/15/1/335


Casimir and pseudo-Casimir interactions in confined polyelectrolytes
Podgornik R. and Dobnikar J.
J. Chem. Phys. 115 (4) 1951 (2001) DOI: 10.1063/1.1383052

Pseudo-Casimir force in confined nematic polymers
Dobnikar J. and Podgornik R.
Europhys. Lett 53 (6) 735 (2001) DOI: 10.1209/epl/i2001-00213-1

Before 2000

Energy level statistics in the transition regime between integrability and chaos for systems with broken antunitary symmetry
Robnik M., Dobnikar J. and Prosen T.
J. Phys. A: Math. Gen. 32 1427 (1999) DOI: 10.1088/0305-4470/32/8/011

Multi-component random model of diffusion in chaotic systems
Robnik M., Prosen T. and Dobnikar J.
J. Phys. A: Math. Gen. 32 1147 (1999) DOI: 10.1088/0305-4470/32/7/006

New universal aspects of diffusion in strongly chaotic systems
Robnik M., Dobnikar J., Rapisarda A., Prosen T. and Petkovsek M.
J. Phys. A: Math. Gen. 30 L803 (1997) DOI: 10.1088/0305-4470/30/23/003